Variant report

Variant	rs73000933
Chromosome Location	chr6:150742613-150742614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12189563	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12191593	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12193588	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12206827	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12214733	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55785509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55925622	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73000950	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7752549	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022455	chr6:150727247-150755933	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv523189	chr6:150741436-150743364	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150740600-150744800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:150740600-150745800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:150740600-150747600	Weak transcription	Right Atrium	heart
4	chr6:150740600-150757200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:150740800-150743200	Weak transcription	Pancreas	Pancrea
6	chr6:150740800-150746800	Weak transcription	Gastric	stomach
7	chr6:150741000-150743000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:150741000-150746800	Weak transcription	Spleen	Spleen
9	chr6:150742000-150742800	Enhancers	Fetal Muscle Leg	muscle
10	chr6:150742600-150747400	Weak transcription	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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