Variant report

Variant	rs73002532
Chromosome Location	chr11:76066136-76066137
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76064413..76068190-chr11:76071048..76073540,4	MCF-7	breast:
2	chr11:76066083..76068514-chr11:76079264..76081458,2	K562	blood:

Variant related genes	Relation type
ENSG00000137492	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17749447	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4320976	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56012153	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72998419	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73002551	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7948288	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9667145	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521451	chr11:76053527-76087844	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76051200-76066200	Weak transcription	NHDF-Ad	bronchial
2	chr11:76054600-76080600	Weak transcription	Psoas Muscle	Psoas
3	chr11:76056800-76080600	Weak transcription	Small Intestine	intestine
4	chr11:76058800-76071400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:76059000-76067200	Weak transcription	HSMMtube	muscle
6	chr11:76059000-76082000	Weak transcription	HMEC	breast
7	chr11:76060200-76069000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr11:76060400-76067000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:76061600-76067800	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr11:76062600-76079200	Weak transcription	Stomach Mucosa	stomach
11	chr11:76062800-76068400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:76063000-76069400	Weak transcription	Fetal Brain Male	brain
13	chr11:76063000-76077000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr11:76063600-76066800	Strong transcription	Stomach Smooth Muscle	stomach
15	chr11:76063600-76067400	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr11:76063600-76067400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr11:76063600-76068800	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr11:76063800-76066200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr11:76063800-76066400	ZNF genes & repeats	Primary T cells from cord blood	blood
20	chr11:76063800-76066600	Strong transcription	NH-A	brain
21	chr11:76063800-76067400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr11:76063800-76067800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:76063800-76067800	Strong transcription	Osteobl	bone
24	chr11:76063800-76068400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr11:76064000-76066200	Strong transcription	Brain Substantia Nigra	brain
26	chr11:76064000-76067000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
27	chr11:76064000-76067600	Strong transcription	Fetal Muscle Leg	muscle
28	chr11:76064000-76067600	ZNF genes & repeats	GM12878-XiMat	blood
29	chr11:76064000-76067600	Strong transcription	NHEK	skin
30	chr11:76064000-76067800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr11:76064000-76067800	Strong transcription	Adipose Nuclei	Adipose
32	chr11:76064000-76067800	Strong transcription	Liver	Liver
33	chr11:76064000-76068000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr11:76064000-76068000	Strong transcription	Fetal Stomach	stomach
35	chr11:76064000-76068400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr11:76064000-76068600	Strong transcription	Fetal Thymus	thymus
37	chr11:76064200-76066400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr11:76064200-76066600	Strong transcription	Spleen	Spleen
39	chr11:76064200-76067200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr11:76064200-76067200	Strong transcription	Left Ventricle	heart
41	chr11:76064200-76067400	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr11:76064200-76067400	Strong transcription	NHLF	lung
43	chr11:76064200-76067600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr11:76064200-76067600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
45	chr11:76064200-76067600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr11:76064200-76067600	Strong transcription	Fetal Muscle Trunk	muscle
47	chr11:76064200-76068000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr11:76064400-76066200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
49	chr11:76064400-76066400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
50	chr11:76064400-76067400	ZNF genes & repeats	Fetal Intestine Small	intestine

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