Variant report

Variant	rs73004311
Chromosome Location	chr6:150955384-150955385
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150947452..150949419-chr6:150952657..150955576,2	MCF-7	breast:
2	chr6:150951151..150953690-chr6:150954298..150957054,3	K562	blood:
3	chr6:150951658..150953857-chr6:150954928..150957054,2	K562	blood:
4	chr6:150954086..150955641-chr6:150957684..150959729,2	MCF-7	breast:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs11968779	0.97[EUR][1000 genomes]
rs1352975	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17080012	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201531	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2345668	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2345669	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs275348	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4323318	0.98[EUR][1000 genomes]
rs4400227	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4530869	0.98[EUR][1000 genomes]
rs4869921	0.93[EUR][1000 genomes]
rs4869922	0.93[EUR][1000 genomes]
rs4870533	0.83[EUR][1000 genomes]
rs4870534	0.85[EUR][1000 genomes]
rs4870535	0.93[EUR][1000 genomes]
rs4870537	0.93[EUR][1000 genomes]
rs62432653	0.82[EUR][1000 genomes]
rs62432656	0.93[EUR][1000 genomes]
rs62432657	0.93[EUR][1000 genomes]
rs62432658	0.93[EUR][1000 genomes]
rs62432659	0.93[EUR][1000 genomes]
rs62434060	0.93[EUR][1000 genomes]
rs62434061	0.93[EUR][1000 genomes]
rs62434062	0.93[EUR][1000 genomes]
rs62434064	0.95[EUR][1000 genomes]
rs62434092	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62434093	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62434094	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62434095	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62434096	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62434097	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62434098	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62434099	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62434100	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62434101	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62434102	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62434103	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62434104	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73002187	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73002188	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73002195	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73016045	0.97[EUR][1000 genomes]
rs73016054	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9478767	0.93[EUR][1000 genomes]
rs9478768	0.93[EUR][1000 genomes]
rs9478769	0.93[EUR][1000 genomes]
rs9478770	0.93[EUR][1000 genomes]
rs9478771	0.93[EUR][1000 genomes]
rs9478772	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9478773	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9478774	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9480490	0.85[EUR][1000 genomes]
rs9480492	0.93[EUR][1000 genomes]
rs9480493	0.93[EUR][1000 genomes]
rs9480494	0.93[EUR][1000 genomes]
rs9480495	0.93[EUR][1000 genomes]
rs9480496	0.93[EUR][1000 genomes]
rs9480497	0.93[EUR][1000 genomes]
rs9480499	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9480503	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9480505	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv886774	chr6:150931131-150983318	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150941800-150962600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:150947600-150957400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:150947800-150959400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:150949000-150958000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:150952400-150955400	Enhancers	Fetal Muscle Trunk	muscle
6	chr6:150952400-150955800	Enhancers	Fetal Stomach	stomach
7	chr6:150952600-150956000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr6:150953200-150957800	Enhancers	Fetal Kidney	kidney
9	chr6:150953600-150956400	Flanking Active TSS	Primary B cells from peripheral blood	blood
10	chr6:150953800-150955400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr6:150953800-150956600	Weak transcription	Stomach Mucosa	stomach
12	chr6:150953800-150962200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:150953800-150962400	Weak transcription	Ovary	ovary
14	chr6:150954000-150955800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:150954000-150955800	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr6:150954000-150961800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr6:150954200-150956400	Weak transcription	Brain Germinal Matrix	brain
18	chr6:150954400-150957600	Enhancers	Fetal Heart	heart
19	chr6:150954400-150958800	Flanking Active TSS	Primary B cells from cord blood	blood
20	chr6:150954600-150955600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr6:150954600-150955600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:150954600-150956000	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr6:150954600-150958000	Weak transcription	Brain Substantia Nigra	brain
24	chr6:150954600-150962600	Weak transcription	Adipose Nuclei	Adipose
25	chr6:150954600-150962600	Weak transcription	Brain Anterior Caudate	brain
26	chr6:150954800-150955600	Active TSS	Rectal Mucosa Donor 29	rectum
27	chr6:150954800-150961800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr6:150955000-150955600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr6:150955000-150955600	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr6:150955000-150955800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr6:150955000-150956000	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr6:150955000-150956000	Weak transcription	Fetal Lung	lung
33	chr6:150955000-150956000	Weak transcription	Small Intestine	intestine
34	chr6:150955000-150956200	Weak transcription	Duodenum Mucosa	Duodenum
35	chr6:150955000-150956200	Weak transcription	Fetal Intestine Small	intestine
36	chr6:150955000-150956400	Weak transcription	Liver	Liver
37	chr6:150955000-150956400	Enhancers	Fetal Thymus	thymus
38	chr6:150955000-150956600	Enhancers	Primary hematopoietic stem cells	blood
39	chr6:150955000-150956800	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr6:150955000-150960800	Weak transcription	Lung	lung
41	chr6:150955000-150962400	Weak transcription	Right Atrium	heart
42	chr6:150955200-150955400	Enhancers	GM12878-XiMat	blood
43	chr6:150955200-150956000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr6:150955200-150956200	Weak transcription	Fetal Intestine Large	intestine
45	chr6:150955200-150956400	Enhancers	Thymus	Thymus
46	chr6:150955200-150957400	Weak transcription	Left Ventricle	heart
47	chr6:150955200-150958600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr6:150955200-150959400	Weak transcription	Fetal Muscle Leg	muscle
49	chr6:150955200-150959400	Weak transcription	Gastric	stomach
50	chr6:150955200-150961000	Weak transcription	Spleen	Spleen

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