Variant report

Variant	rs73004397
Chromosome Location	chr6:150973583-150973584
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10085221	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs182140	0.84[ASN][1000 genomes]
rs1964631	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4869924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869925	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4869932	0.87[AFR][1000 genomes]
rs73006338	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73006339	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73008164	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73008165	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73008166	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73008169	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9478777	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9478778	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9478786	0.87[AFR][1000 genomes]
rs9480511	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9480512	0.86[AMR][1000 genomes]
rs9480513	0.88[AMR][1000 genomes]
rs9480515	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9480516	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9480517	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9480518	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9480520	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9480521	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9480522	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9480523	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9480524	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9480540	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv886774	chr6:150931131-150983318	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1030326	chr6:150967665-151641372	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150959800-150987400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:150960400-150980600	Weak transcription	Stomach Mucosa	stomach
3	chr6:150961600-150975200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr6:150961600-150980200	Weak transcription	Lung	lung
5	chr6:150963000-150979200	Weak transcription	Fetal Lung	lung
6	chr6:150963800-150974200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:150964000-150974000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr6:150964200-150975200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr6:150964600-150977400	Weak transcription	Small Intestine	intestine
10	chr6:150964600-150979200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr6:150964600-150980000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:150964800-150975400	Weak transcription	Fetal Kidney	kidney
13	chr6:150964800-150987400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr6:150965000-150974600	Weak transcription	Thymus	Thymus
15	chr6:150967400-150975400	Weak transcription	Esophagus	oesophagus
16	chr6:150967800-150974400	Weak transcription	Spleen	Spleen
17	chr6:150967800-150980200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:150969200-150974000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:150971400-150978000	Strong transcription	Fetal Thymus	thymus
20	chr6:150971400-150979200	Weak transcription	Brain Substantia Nigra	brain
21	chr6:150971600-150975000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:150971600-150985400	Strong transcription	Primary B cells from peripheral blood	blood
23	chr6:150971600-150986800	Weak transcription	Left Ventricle	heart
24	chr6:150972400-150973600	Strong transcription	Primary B cells from cord blood	blood
25	chr6:150972800-150973600	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr6:150973000-150974600	Weak transcription	Fetal Stomach	stomach
27	chr6:150973200-150973600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:150973200-150974600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr6:150973200-150980600	Weak transcription	Liver	Liver
30	chr6:150973400-150977200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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