Variant report

Variant	rs73005063
Chromosome Location	chr3:155339114-155339115
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11914419	1.00[AMR][1000 genomes]
rs11917394	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11922468	1.00[AMR][1000 genomes]
rs11922696	1.00[AMR][1000 genomes]
rs11924623	1.00[AMR][1000 genomes]
rs11924959	1.00[AMR][1000 genomes]
rs11928132	1.00[AMR][1000 genomes]
rs58069104	1.00[AMR][1000 genomes]
rs58793189	1.00[AMR][1000 genomes]
rs59743478	1.00[AMR][1000 genomes]
rs6775538	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6806201	1.00[AMR][1000 genomes]
rs72996979	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72996983	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72998908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72998923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73003533	1.00[AMR][1000 genomes]
rs73003544	1.00[AMR][1000 genomes]
rs73003546	1.00[AMR][1000 genomes]
rs73005094	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73005098	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73005138	1.00[AMR][1000 genomes]
rs73007013	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73007026	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73007035	1.00[AMR][1000 genomes]
rs73021536	1.00[AMR][1000 genomes]
rs73021549	1.00[AMR][1000 genomes]
rs7641442	1.00[AMR][1000 genomes]
rs7653655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv822300	chr3:155338203-155344148	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv822301	chr3:155338203-155344202	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155336400-155339200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:155336600-155339200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr3:155336800-155346200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:155338400-155347000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:155338600-155346400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr3:155338600-155347000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:155338800-155340000	Weak transcription	HepG2	liver
8	chr3:155339000-155340000	Weak transcription	Thymus	Thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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