Variant report

Variant	rs73007748
Chromosome Location	chr1:152287857-152287858
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs16833939	1.00[AFR][1000 genomes]
rs57145409	1.00[AFR][1000 genomes]
rs72999305	1.00[AFR][1000 genomes]
rs72999320	1.00[AFR][1000 genomes]
rs72999351	1.00[AFR][1000 genomes]
rs73001310	1.00[AFR][1000 genomes]
rs73003250	1.00[AFR][1000 genomes]
rs73005434	1.00[AFR][1000 genomes]
rs73005464	1.00[AFR][1000 genomes]
rs73005467	1.00[AFR][1000 genomes]
rs73007750	1.00[AFR][1000 genomes]
rs73007753	1.00[AFR][1000 genomes]
rs73007784	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014095	chr1:152104486-152454591	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1005472	chr1:152247763-152443448	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv535161	chr1:152247763-152443448	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv471348	chr1:152274651-152297679	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152278200-152288000	Weak transcription	Right Ventricle	heart
2	chr1:152285200-152297200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr1:152285400-152288600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr1:152286200-152289200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:152286400-152288000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr1:152286600-152322200	Weak transcription	Ovary	ovary
7	chr1:152287000-152291400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links