Variant report

Variant	rs73007973
Chromosome Location	chr6:150525669-150525670
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150523335..150526077-chr6:150588121..150590622,2	MCF-7	breast:
2	chr6:150518298..150521152-chr6:150523437..150526060,2	K562	blood:
3	chr6:150525124..150527770-chr6:150549822..150552808,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11752137	1.00[ASN][1000 genomes]
rs11752147	1.00[ASN][1000 genomes]
rs11752703	1.00[ASN][1000 genomes]
rs11752932	1.00[ASN][1000 genomes]
rs11753008	1.00[ASN][1000 genomes]
rs11757696	1.00[ASN][1000 genomes]
rs13193924	1.00[ASN][1000 genomes]
rs13198606	1.00[ASN][1000 genomes]
rs13206701	1.00[ASN][1000 genomes]
rs13207323	1.00[ASN][1000 genomes]
rs13215621	1.00[ASN][1000 genomes]
rs34735685	1.00[ASN][1000 genomes]
rs34901813	1.00[ASN][1000 genomes]
rs35111820	1.00[ASN][1000 genomes]
rs35445969	1.00[ASN][1000 genomes]
rs35548444	1.00[ASN][1000 genomes]
rs35963994	1.00[ASN][1000 genomes]
rs36001360	1.00[ASN][1000 genomes]
rs36096822	1.00[ASN][1000 genomes]
rs62440052	1.00[ASN][1000 genomes]
rs71570211	1.00[ASN][1000 genomes]
rs71570212	1.00[ASN][1000 genomes]
rs71570213	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150517600-150529200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:150518200-150530800	Enhancers	Fetal Heart	heart
3	chr6:150521600-150526600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:150523200-150526600	Enhancers	Left Ventricle	heart
5	chr6:150523200-150526600	Enhancers	Right Ventricle	heart
6	chr6:150523600-150526000	Enhancers	Duodenum Mucosa	Duodenum
7	chr6:150523600-150526600	Weak transcription	Pancreas	Pancrea
8	chr6:150523800-150525800	Weak transcription	Lung	lung
9	chr6:150523800-150526200	Weak transcription	Small Intestine	intestine
10	chr6:150524000-150526200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:150524000-150532400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:150524200-150526200	Weak transcription	Placenta	Placenta
13	chr6:150524200-150526600	Enhancers	Psoas Muscle	Psoas
14	chr6:150524400-150525800	Weak transcription	Colonic Mucosa	Colon
15	chr6:150524400-150526400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
16	chr6:150524600-150526200	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr6:150524800-150525800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:150524800-150526200	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr6:150524800-150528400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:150524800-150528400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr6:150525200-150525800	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr6:150525200-150528600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:150525200-150529000	Weak transcription	HMEC	breast
24	chr6:150525400-150525800	Weak transcription	Fetal Intestine Small	intestine
25	chr6:150525400-150526000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr6:150525400-150526400	Weak transcription	Esophagus	oesophagus
27	chr6:150525400-150528600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr6:150525400-150533400	Weak transcription	Right Atrium	heart
29	chr6:150525600-150526200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
30	chr6:150525600-150526200	Strong transcription	NHEK	skin
31	chr6:150525600-150526400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
32	chr6:150525600-150526600	Enhancers	Primary B cells from cord blood	blood
33	chr6:150525600-150526600	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr6:150525600-150526600	Enhancers	Fetal Thymus	thymus
35	chr6:150525600-150526800	Enhancers	K562	blood

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