Variant report

Variant	rs7300979
Chromosome Location	chr12:50886022-50886023
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:50884317..50886890-chr12:51151312..51154186,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DIP2B-2	chr12:50885633-50886228	l_644_chr12:50885632-50886694_testes

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10747586	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10783367	0.84[EUR][1000 genomes]
rs10783377	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10783380	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10876041	0.85[EUR][1000 genomes]
rs10876044	0.85[EUR][1000 genomes]
rs10876046	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11609231	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11611288	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11614911	0.84[EUR][1000 genomes]
rs11832315	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12821270	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2250751	1.00[ASN][1000 genomes]
rs2250752	1.00[ASN][1000 genomes]
rs2251024	1.00[ASN][1000 genomes]
rs2251603	1.00[ASN][1000 genomes]
rs2252589	1.00[ASN][1000 genomes]
rs2684889	1.00[ASN][1000 genomes]
rs2684898	1.00[ASN][1000 genomes]
rs2684900	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2684901	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2700479	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2700480	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2700482	1.00[ASN][1000 genomes]
rs2700485	1.00[ASN][1000 genomes]
rs2731434	1.00[ASN][1000 genomes]
rs2731439	1.00[ASN][1000 genomes]
rs2731440	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2731442	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2731443	1.00[ASN][1000 genomes]
rs4768885	0.83[EUR][1000 genomes]
rs4768886	0.83[EUR][1000 genomes]
rs55939211	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56089074	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56104942	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66597435	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66644594	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67701624	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs68171620	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7131795	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7135837	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7305655	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7307815	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7957060	0.89[EUR][1000 genomes]
rs7977690	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1820967	chr12:50856613-51002088	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7300979	CERS5	cis	Nerve Tibial	GTEx

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links