Variant report

Variant	rs73012053
Chromosome Location	chr1:160889479-160889480
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs57704705	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58475782	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60513470	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60517509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61734482	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012079	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012091	1.00[AMR][1000 genomes]
rs73020000	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73020001	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021982	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021996	1.00[AMR][1000 genomes]
rs73022002	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023905	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023999	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73024002	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73025715	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73025723	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027804	1.00[AMR][1000 genomes]
rs73027807	1.00[AMR][1000 genomes]
rs73027815	1.00[AMR][1000 genomes]
rs73027821	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027837	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027849	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029707	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029710	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029740	1.00[AFR][1000 genomes]
rs73029742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	esv3430322	chr1:160851829-160920480	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv947200	chr1:160870136-160905390	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160889000-160890000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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