Variant report

Variant	rs73015144
Chromosome Location	chr2:149114724-149114725
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs57084762	1.00[AMR][1000 genomes]
rs57577804	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58448454	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60639125	1.00[AMR][1000 genomes]
rs60679558	1.00[AMR][1000 genomes]
rs73009282	1.00[AMR][1000 genomes]
rs73009297	1.00[AMR][1000 genomes]
rs73011215	1.00[AMR][1000 genomes]
rs73011217	1.00[AMR][1000 genomes]
rs73011296	1.00[AMR][1000 genomes]
rs73013015	1.00[AMR][1000 genomes]
rs73013043	1.00[AMR][1000 genomes]
rs73013055	1.00[AMR][1000 genomes]
rs73013085	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73015113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73015118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73015121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73015125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73015128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73015131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73015150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73015159	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73015188	1.00[AMR][1000 genomes]
rs73017110	1.00[AMR][1000 genomes]
rs73017112	1.00[AMR][1000 genomes]
rs73019204	1.00[AMR][1000 genomes]
rs73019217	1.00[AMR][1000 genomes]
rs73019220	1.00[AMR][1000 genomes]
rs73021555	1.00[AMR][1000 genomes]
rs73021569	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009608	chr2:148897348-149133718	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv2753542	chr2:149004714-149268503	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1012275	chr2:149031668-149316793	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1012123	chr2:149078500-149151358	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv583289	chr2:149091754-149170115	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv875277	chr2:149094415-149178974	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv875278	chr2:149094415-149201775	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv875279	chr2:149111470-149201775	Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:149089200-149119400	Weak transcription	Fetal Intestine Small	intestine
2	chr2:149094600-149115400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr2:149094600-149119800	Weak transcription	Fetal Stomach	stomach
4	chr2:149096800-149120800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr2:149100800-149137000	Weak transcription	Primary T cells from cord blood	blood
6	chr2:149101000-149126000	Weak transcription	Psoas Muscle	Psoas
7	chr2:149101800-149115400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr2:149102800-149136600	Weak transcription	Primary B cells from cord blood	blood
9	chr2:149108600-149115200	Weak transcription	Fetal Lung	lung
10	chr2:149109600-149116400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr2:149111400-149115400	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links