Variant report

Variant	rs73018686
Chromosome Location	chr3:145516252-145516253
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:145515573..145518093-chr3:145523034..145526059,3	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6440370	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73018684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877584	chr3:144903957-145833232	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	esv3330499	chr3:145334189-145596853	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3379945	chr3:145351163-145679850	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv877610	chr3:145465395-145653627	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv2751980	chr3:145473020-145758194	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1013475	chr3:145478985-145750509	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1010509	chr3:145478985-145757483	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1005624	chr3:145486437-145750509	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv999344	chr3:145506353-145750883	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv536757	chr3:145506353-145750883	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	esv33307	chr3:145506383-145667833	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145515400-145517200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:145515800-145516400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:145515800-145517800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr3:145515800-145517800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:145516000-145516400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr3:145516000-145516600	Enhancers	Brain Hippocampus Middle	brain
7	chr3:145516000-145516600	Enhancers	Gastric	stomach
8	chr3:145516000-145516600	Enhancers	Pancreas	Pancrea
9	chr3:145516000-145517600	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr3:145516000-145518000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:145516200-145516600	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr3:145516200-145516600	Bivalent Enhancer	HSMMtube	muscle
13	chr3:145516200-145516800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr3:145516200-145516800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:145516200-145516800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr3:145516200-145516800	Enhancers	Brain Cingulate Gyrus	brain
17	chr3:145516200-145516800	Enhancers	Esophagus	oesophagus
18	chr3:145516200-145517000	Enhancers	Fetal Muscle Leg	muscle
19	chr3:145516200-145517200	Enhancers	H1 Cell Line	embryonic stem cell
20	chr3:145516200-145517200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr3:145516200-145517200	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr3:145516200-145517800	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr3:145516200-145518000	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr3:145516200-145518800	Enhancers	Fetal Lung	lung

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