Variant report

Variant	rs73022458
Chromosome Location	chr3:162481157-162481158
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:162475543..162478495-chr3:162480272..162482533,2	MCF-7	breast:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs59930817	1.00[AMR][1000 genomes]
rs60820929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61133368	1.00[AMR][1000 genomes]
rs6766447	1.00[AMR][1000 genomes]
rs6766776	1.00[AMR][1000 genomes]
rs6772450	1.00[AMR][1000 genomes]
rs6772457	1.00[AMR][1000 genomes]
rs6774881	1.00[AMR][1000 genomes]
rs6786224	1.00[AMR][1000 genomes]
rs6786322	1.00[AMR][1000 genomes]
rs6791531	1.00[AMR][1000 genomes]
rs6799369	1.00[AMR][1000 genomes]
rs6805653	1.00[AMR][1000 genomes]
rs73011788	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73015772	1.00[AMR][1000 genomes]
rs73016445	1.00[AMR][1000 genomes]
rs73019598	1.00[AMR][1000 genomes]
rs73021311	1.00[AMR][1000 genomes]
rs73021327	1.00[AMR][1000 genomes]
rs73021381	1.00[AMR][1000 genomes]
rs73021382	1.00[AMR][1000 genomes]
rs73021391	1.00[AMR][1000 genomes]
rs73021396	1.00[AMR][1000 genomes]
rs73022451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73022476	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023104	1.00[AMR][1000 genomes]
rs73023108	1.00[AMR][1000 genomes]
rs73023116	1.00[AMR][1000 genomes]
rs73023118	1.00[AMR][1000 genomes]
rs73023119	1.00[AMR][1000 genomes]
rs73023127	1.00[AMR][1000 genomes]
rs73023130	1.00[AMR][1000 genomes]
rs73023132	1.00[AMR][1000 genomes]
rs73023137	1.00[AMR][1000 genomes]
rs73023146	1.00[AMR][1000 genomes]
rs73023149	1.00[AMR][1000 genomes]
rs73023151	1.00[AMR][1000 genomes]
rs73023157	1.00[AMR][1000 genomes]
rs73023175	1.00[AMR][1000 genomes]
rs73023178	1.00[AMR][1000 genomes]
rs73023181	1.00[AMR][1000 genomes]
rs73024484	0.84[AFR][1000 genomes]
rs73024488	0.84[AFR][1000 genomes]
rs73025136	1.00[AMR][1000 genomes]
rs73025189	1.00[AMR][1000 genomes]
rs73025191	1.00[AMR][1000 genomes]
rs73025196	1.00[AMR][1000 genomes]
rs73025198	1.00[AMR][1000 genomes]
rs73029652	1.00[AMR][1000 genomes]
rs7612226	1.00[AMR][1000 genomes]
rs7616970	1.00[AMR][1000 genomes]
rs7630457	1.00[AMR][1000 genomes]
rs7630644	1.00[AMR][1000 genomes]
rs7634722	1.00[AMR][1000 genomes]
rs7638149	1.00[AMR][1000 genomes]
rs7653833	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006802	chr3:161921063-162599175	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv428424	chr3:162145988-163033943	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1012160	chr3:162182166-162540478	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv592201	chr3:162188625-163142162	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv470994	chr3:162217993-162945834	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv877758	chr3:162287573-162521339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv877759	chr3:162303276-162521339	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv877761	chr3:162346392-162521339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv1005637	chr3:162379324-162635451	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv877762	chr3:162400620-162521339	Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv869804	chr3:162414099-162776884	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv829776	chr3:162422424-162577578	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv1001282	chr3:162429561-162513137	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	nsv999246	chr3:162447248-162625983	Weak transcription Genic enhancers Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
15	nsv592210	chr3:162447818-162633607	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
16	nsv877763	chr3:162455815-162521339	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv999141	chr3:162458327-162508256	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv877764	chr3:162458498-162496237	Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv877765	chr3:162458498-162498758	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv980076	chr3:162468193-162485928	ZNF genes & repeats Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
21	esv2757902	chr3:162471049-162742794	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	esv2759197	chr3:162471049-162742794	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
23	nsv870377	chr3:162474576-162630179	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
24	nsv877766	chr3:162474834-162498758	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
25	nsv877767	chr3:162474834-162521339	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
26	nsv4093	chr3:162479653-162654587	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:162480400-162481200	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr3:162480400-162482000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr3:162481000-162483200	Weak transcription	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links