Variant report

Variant	rs73023999
Chromosome Location	chr1:160830736-160830737
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:160829381..160830881-chr5:89705288..89707065,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000153140	Chromatin interaction
ENSG00000255647	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs57704705	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58475782	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60513470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60517509	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61734482	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012053	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012091	1.00[AMR][1000 genomes]
rs73017967	0.86[AFR][1000 genomes]
rs73020000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73020001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021996	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73022002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73024002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73025715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73025723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027804	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027807	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027815	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027821	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027837	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027849	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029732	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029740	0.93[AFR][1000 genomes]
rs73029742	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029751	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1822379	chr1:160545332-160831143	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv464161	chr1:160747615-160852046	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv548057	chr1:160747615-160852046	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160821000-160830800	Weak transcription	Spleen	Spleen
2	chr1:160824600-160831200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:160826400-160830800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr1:160826400-160831800	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr1:160826600-160832200	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr1:160828600-160832200	Weak transcription	Right Atrium	heart
7	chr1:160828600-160835000	Weak transcription	Fetal Intestine Large	intestine
8	chr1:160828800-160832000	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr1:160829000-160830800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr1:160829000-160831800	Weak transcription	Fetal Intestine Small	intestine
11	chr1:160829200-160830800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr1:160829200-160831000	Weak transcription	Colonic Mucosa	Colon
13	chr1:160829200-160832400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr1:160829800-160830800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr1:160830000-160833000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
16	chr1:160830000-160833200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr1:160830000-160833800	Enhancers	Primary B cells from cord blood	blood
18	chr1:160830200-160831200	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr1:160830200-160834200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
20	chr1:160830400-160830800	Enhancers	Adipose Nuclei	Adipose
21	chr1:160830400-160831000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
22	chr1:160830400-160831000	Enhancers	HepG2	liver
23	chr1:160830600-160831000	Active TSS	Duodenum Mucosa	Duodenum
24	chr1:160830600-160831200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr1:160830600-160831200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
26	chr1:160830600-160831200	Flanking Active TSS	Liver	Liver
27	chr1:160830600-160831400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr1:160830600-160832600	Flanking Active TSS	Primary hematopoietic stem cells	blood
29	chr1:160830600-160833000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
30	chr1:160830600-160833000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr1:160830600-160833600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood

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