Variant report
| Variant | rs73025614 |
|---|---|
| Chromosome Location | chr2:181968740-181968741 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-CERKL-2 | chr2:181968728-181968784 | XLOC_002417 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10497575 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16867379 | 1.00[EUR][1000 genomes] |
| rs16867382 | 1.00[EUR][1000 genomes] |
| rs2292856 | 1.00[EUR][1000 genomes] |
| rs2368188 | 1.00[EUR][1000 genomes] |
| rs4572560 | 1.00[EUR][1000 genomes] |
| rs4667049 | 1.00[EUR][1000 genomes] |
| rs57612208 | 1.00[EUR][1000 genomes] |
| rs73025610 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73025615 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs73037059 | 1.00[EUR][1000 genomes] |
| rs73037069 | 1.00[EUR][1000 genomes] |
| rs73037078 | 1.00[EUR][1000 genomes] |
| rs73037079 | 1.00[EUR][1000 genomes] |
| rs73037093 | 1.00[EUR][1000 genomes] |
| rs73037095 | 1.00[EUR][1000 genomes] |
| rs73037098 | 1.00[EUR][1000 genomes] |
| rs73039019 | 1.00[EUR][1000 genomes] |
| rs73039024 | 1.00[EUR][1000 genomes] |
| rs73039027 | 1.00[EUR][1000 genomes] |
| rs73039030 | 1.00[EUR][1000 genomes] |
| rs73039098 | 1.00[EUR][1000 genomes] |
| rs73039101 | 1.00[EUR][1000 genomes] |
| rs73041008 | 1.00[EUR][1000 genomes] |
| rs73041014 | 1.00[EUR][1000 genomes] |
| rs73041021 | 1.00[EUR][1000 genomes] |
| rs873255 | 1.00[EUR][1000 genomes] |
| rs908735 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv431824 | chr2:181946115-182118559 | ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 2 | nsv1005870 | chr2:181968637-182921439 | Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 39 gene(s) | inside rSNPs | diseases |
| 3 | nsv536063 | chr2:181968637-182921439 | Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 39 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:181967800-181970800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 2 | chr2:181968400-181969600 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
