Variant report

Variant	rs73025715
Chromosome Location	chr1:160834116-160834117
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:160833084-160834145	K562	blood:	n/a	n/a
2	EBF1	chr1:160833958-160834276	GM12878	blood:	n/a	chr1:160834148-160834159 chr1:160834167-160834178 chr1:160834168-160834178
3	EBF1	chr1:160833961-160834348	GM12878	blood:	n/a	chr1:160834148-160834159 chr1:160834167-160834178 chr1:160834168-160834178
4	EBF1	chr1:160834043-160834293	GM12878	blood:	n/a	chr1:160834148-160834159 chr1:160834167-160834178 chr1:160834168-160834178

Variant related genes	Relation type
CD244	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs57704705	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58475782	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60513470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60517509	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61734482	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012053	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012091	1.00[AMR][1000 genomes]
rs73017967	0.86[AFR][1000 genomes]
rs73020000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73020001	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021982	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021996	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73022002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73024002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73025723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027804	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027807	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027815	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027821	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027837	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027849	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029732	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029740	0.93[AFR][1000 genomes]
rs73029742	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029751	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464161	chr1:160747615-160852046	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv548057	chr1:160747615-160852046	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160828600-160835000	Weak transcription	Fetal Intestine Large	intestine
2	chr1:160830200-160834200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr1:160831800-160834400	Enhancers	GM12878-XiMat	blood
4	chr1:160832200-160837400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:160832600-160835400	Enhancers	Primary hematopoietic stem cells	blood
6	chr1:160832600-160835400	Weak transcription	Liver	Liver
7	chr1:160832600-160835400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr1:160832600-160835400	Weak transcription	Right Atrium	heart
9	chr1:160832600-160835600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr1:160832600-160847400	Weak transcription	Spleen	Spleen
11	chr1:160832800-160834600	Enhancers	Ovary	ovary
12	chr1:160833000-160834600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr1:160833000-160834800	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr1:160833000-160835400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr1:160833600-160834400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr1:160833600-160840000	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr1:160833800-160837400	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr1:160834000-160834200	Enhancers	Fetal Intestine Small	intestine
19	chr1:160834000-160834600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr1:160834000-160837600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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