Variant report

Variant	rs7302682
Chromosome Location	chr12:10905253-10905254
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16923826	0.98[ASN][1000 genomes]
rs60497781	1.00[ASN][1000 genomes]
rs6488325	1.00[ASN][1000 genomes]
rs73046525	1.00[ASN][1000 genomes]
rs74063041	0.98[ASN][1000 genomes]
rs999392	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049362	chr12:10893573-11018850	Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7302682	DPPA3	cis	parietal	SCAN
rs7302682	RPL13P5	cis	cerebellum	SCAN
rs7302682	STYK1	cis	parietal	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10902800-10905600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr12:10902800-10905600	Weak transcription	HMEC	breast
3	chr12:10903000-10905600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr12:10903200-10905400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr12:10903200-10905400	Weak transcription	Fetal Kidney	kidney
6	chr12:10903200-10905600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr12:10903200-10905600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr12:10903200-10905600	Weak transcription	Psoas Muscle	Psoas
9	chr12:10903200-10905600	Weak transcription	HSMM	muscle
10	chr12:10903200-10905600	Weak transcription	NHEK	skin
11	chr12:10903200-10908400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr12:10903400-10908200	Weak transcription	Liver	Liver
13	chr12:10903600-10905800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr12:10905200-10906000	Enhancers	Osteobl	bone

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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