Variant report

Variant	rs73027502
Chromosome Location	chr2:182041376-182041377
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs56977169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59161684	0.85[AFR][1000 genomes]
rs59260686	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs62180166	0.96[ASN][1000 genomes]
rs73025698	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73027403	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73027409	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73027412	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73027417	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73027429	0.92[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs73027433	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73027437	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73027439	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73027441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73027445	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73027455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73027457	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73027466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73027468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73027474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73027482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73027499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73029106	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73029172	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73029178	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73029179	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73029181	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73029183	0.96[ASN][1000 genomes]
rs73029186	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73029188	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73029202	0.81[AFR][1000 genomes]
rs73031204	0.81[AFR][1000 genomes]
rs73976816	0.96[ASN][1000 genomes]
rs997716	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431824	chr2:181946115-182118559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182031800-182050400	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr2:182032400-182048400	Weak transcription	Fetal Thymus	thymus
3	chr2:182035200-182042800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr2:182035200-182044800	Weak transcription	Dnd41	blood
5	chr2:182035200-182048800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr2:182036200-182041400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr2:182036400-182042600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr2:182038400-182043200	Enhancers	HSMMtube	muscle
9	chr2:182039600-182044000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr2:182040400-182041400	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr2:182040400-182041400	Weak transcription	HSMM	muscle
12	chr2:182040400-182041600	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr2:182040400-182041600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr2:182040400-182041800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr2:182040400-182042600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr2:182040400-182042600	Weak transcription	GM12878-XiMat	blood
17	chr2:182040400-182042800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr2:182041000-182045200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr2:182041200-182041600	Enhancers	NHEK	skin
20	chr2:182041200-182041800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr2:182041200-182043800	Enhancers	Primary T cells from cord blood	blood

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