Variant report

Variant	rs73029742
Chromosome Location	chr1:160881761-160881762
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs57704705	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58475782	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60513470	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60517509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61734482	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012079	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012091	1.00[AMR][1000 genomes]
rs73020000	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73020001	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021982	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73021996	1.00[AMR][1000 genomes]
rs73022002	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023905	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73023999	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73024002	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73025715	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73025723	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027804	1.00[AMR][1000 genomes]
rs73027807	1.00[AMR][1000 genomes]
rs73027815	1.00[AMR][1000 genomes]
rs73027821	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027837	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027849	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029707	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029710	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73029740	1.00[AFR][1000 genomes]
rs73029751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	esv3430322	chr1:160851829-160920480	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv947200	chr1:160870136-160905390	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:160880000-160884400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:160880600-160882600	Enhancers	Fetal Intestine Large	intestine
3	chr1:160880600-160884000	Enhancers	Fetal Intestine Small	intestine
4	chr1:160880800-160882200	Enhancers	Placenta	Placenta
5	chr1:160881000-160882800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr1:160881000-160882800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr1:160881200-160881800	Flanking Active TSS	Duodenum Mucosa	Duodenum
8	chr1:160881200-160881800	Enhancers	Stomach Mucosa	stomach
9	chr1:160881200-160882000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr1:160881200-160882000	Enhancers	K562	blood
11	chr1:160881200-160882200	Enhancers	Placenta Amnion	Placenta Amnion
12	chr1:160881200-160882600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr1:160881200-160882600	Enhancers	Ovary	ovary
14	chr1:160881400-160881800	Flanking Active TSS	Fetal Heart	heart
15	chr1:160881400-160882000	Enhancers	H1 Cell Line	embryonic stem cell
16	chr1:160881400-160882000	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr1:160881400-160882000	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr1:160881600-160882000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr1:160881600-160882000	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr1:160881600-160882000	Enhancers	Fetal Lung	lung
21	chr1:160881600-160882400	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr1:160881600-160882400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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