Variant report

Variant	rs73033307
Chromosome Location	chr2:183501408-183501409
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs57505922	0.81[AFR][1000 genomes]
rs73033305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73033310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73033312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73033315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73033317	1.00[AFR][1000 genomes]
rs73033324	0.91[AFR][1000 genomes]
rs73050455	0.81[AFR][1000 genomes]
rs73050467	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2830429	chr2:183300759-183545378	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2757842	chr2:183437700-183835084	Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv2759104	chr2:183437700-183835084	Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv999603	chr2:183465151-183551522	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183499400-183501600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr2:183501000-183502000	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr2:183501200-183501800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr2:183501200-183501800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:183501200-183502000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr2:183501400-183501600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr2:183501400-183501800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr2:183501400-183501800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:183501400-183501800	Enhancers	H9 Cell Line	embryonic stem cell
10	chr2:183501400-183501800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr2:183501400-183501800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr2:183501400-183502000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr2:183501400-183502000	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr2:183501400-183502000	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr2:183501400-183502600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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