Variant report

Variant	rs73038028
Chromosome Location	chr19:36696295-36696296
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:36636671..36639034-chr19:36695235..36696837,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10403738	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10407835	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10407850	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10409983	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10412832	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10415410	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10416509	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10416742	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10416925	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10419269	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10425166	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11882933	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12459704	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12460466	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12461077	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12461112	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12461855	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28414272	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28528757	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4361039	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4806284	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4806293	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4806294	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4806295	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56206115	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56316708	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56686317	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57385903	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57734651	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59026641	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59295196	0.94[ASN][1000 genomes]
rs61413061	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62113093	0.96[EUR][1000 genomes]
rs62113146	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62113148	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7251745	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73040107	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73040113	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs8106135	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8111860	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3526489	chr19:36306483-36741945	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
2	esv3526490	chr19:36306483-36741945	Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	114 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs73038028	LINC00665	cis	Muscle Skeletal	GTEx
rs73038028	LINC00665	cis	Nerve Tibial	GTEx

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36669600-36704800	Weak transcription	Psoas Muscle	Psoas
2	chr19:36673800-36704800	Weak transcription	Fetal Kidney	kidney
3	chr19:36674000-36704800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr19:36674400-36704600	Weak transcription	Fetal Brain Male	brain
5	chr19:36674600-36704600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr19:36674600-36704600	Weak transcription	HMEC	breast
7	chr19:36674600-36704600	Weak transcription	NH-A	brain
8	chr19:36674600-36704600	Weak transcription	NHEK	skin
9	chr19:36674600-36704800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr19:36682600-36705000	Weak transcription	Small Intestine	intestine
11	chr19:36685200-36704800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr19:36685400-36704600	Weak transcription	HSMM	muscle
13	chr19:36685800-36699400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr19:36685800-36704600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr19:36685800-36704800	Weak transcription	Colon Smooth Muscle	Colon
16	chr19:36686000-36697000	Weak transcription	Aorta	Aorta
17	chr19:36686000-36697800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr19:36686000-36698800	Weak transcription	Brain Anterior Caudate	brain
19	chr19:36686000-36702800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr19:36686000-36703800	Weak transcription	Dnd41	blood
21	chr19:36686000-36704000	Weak transcription	Pancreas	Pancrea
22	chr19:36686000-36704600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr19:36686000-36704600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr19:36686000-36704600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr19:36686000-36704600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr19:36686000-36704600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr19:36686000-36704600	Weak transcription	Colonic Mucosa	Colon
28	chr19:36686000-36704600	Weak transcription	Gastric	stomach
29	chr19:36686000-36704600	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr19:36686000-36704600	Weak transcription	Spleen	Spleen
31	chr19:36686000-36704600	Weak transcription	Osteobl	bone
32	chr19:36686000-36704800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr19:36686000-36704800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr19:36686000-36704800	Weak transcription	Duodenum Mucosa	Duodenum
35	chr19:36686000-36704800	Weak transcription	Placenta	Placenta
36	chr19:36686000-36704800	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr19:36686000-36704800	Weak transcription	Rectal Smooth Muscle	rectum
38	chr19:36686000-36704800	Weak transcription	Thymus	Thymus
39	chr19:36686200-36701400	Weak transcription	A549	lung
40	chr19:36686200-36704000	Weak transcription	Adipose Nuclei	Adipose
41	chr19:36686200-36704000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr19:36686200-36704600	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr19:36686200-36704800	Weak transcription	Primary B cells from cord blood	blood
44	chr19:36686200-36704800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr19:36686200-36704800	Weak transcription	Left Ventricle	heart
46	chr19:36686200-36704800	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr19:36686400-36704600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr19:36686400-36704800	Weak transcription	Fetal Lung	lung
49	chr19:36689600-36704600	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr19:36689800-36704800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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