Variant report

Variant	rs73038039
Chromosome Location	chr1:172677232-172677233
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172500017..172501965-chr1:172676130..172677845,2	MCF-7	breast:
2	chr1:172676899..172680386-chr1:172681123..172684059,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000094975	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11803323	0.85[AMR][1000 genomes]
rs11803350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1492902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1492903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16844922	0.85[AMR][1000 genomes]
rs16844927	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16844937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16844939	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16844967	0.85[AMR][1000 genomes]
rs16844968	0.85[AMR][1000 genomes]
rs41421246	0.85[AMR][1000 genomes]
rs55913261	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56663247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57707973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59977644	0.85[AMR][1000 genomes]
rs61223740	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61383871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6425039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6425040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6425042	0.85[AMR][1000 genomes]
rs6664516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6691607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73038034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73038049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73038063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73038078	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73038085	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73038088	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73038099	0.85[AMR][1000 genomes]
rs7519689	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7527983	1.00[AMR][1000 genomes]
rs7532033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7537304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7542816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7553473	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs987261	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs989340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172669400-172679000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr1:172673400-172679000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr1:172674000-172677800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:172674000-172681000	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr1:172674400-172683000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr1:172674400-172683000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr1:172674600-172677800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr1:172674600-172682800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr1:172675200-172679000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr1:172675400-172678400	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr1:172675400-172678400	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr1:172676200-172679000	Enhancers	Primary T cells fromperipheralblood	blood
13	chr1:172676400-172678400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr1:172676400-172678600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr1:172676600-172677400	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr1:172676600-172677800	Enhancers	Dnd41	blood
17	chr1:172677000-172678400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr1:172677000-172679000	Enhancers	Fetal Thymus	thymus
19	chr1:172677200-172677400	Enhancers	Primary T cells from cord blood	blood
20	chr1:172677200-172677600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr1:172677200-172678400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr1:172677200-172678400	Enhancers	Thymus	Thymus

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