Variant report

Variant	rs73041112
Chromosome Location	chr1:173361059-173361060
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10798270	1.00[EUR][1000 genomes]
rs1418193	1.00[EUR][1000 genomes]
rs16845740	1.00[EUR][1000 genomes]
rs1832847	1.00[EUR][1000 genomes]
rs2422342	1.00[EUR][1000 genomes]
rs2422428	1.00[EUR][1000 genomes]
rs4916329	1.00[EUR][1000 genomes]
rs6669012	1.00[EUR][1000 genomes]
rs6671598	1.00[EUR][1000 genomes]
rs6678135	1.00[EUR][1000 genomes]
rs6689832	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6696532	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6700353	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73039105	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73039113	1.00[EUR][1000 genomes]
rs73039196	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73041128	1.00[EUR][1000 genomes]
rs7544153	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs947503	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173345600-173368000	Weak transcription	Primary T cells from cord blood	blood
2	chr1:173346800-173363800	Weak transcription	Aorta	Aorta
3	chr1:173347200-173375000	Weak transcription	Spleen	Spleen
4	chr1:173348600-173389400	Weak transcription	Right Ventricle	heart
5	chr1:173353800-173362000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:173354000-173379800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr1:173354800-173363800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr1:173354800-173376000	Weak transcription	Primary B cells from cord blood	blood
9	chr1:173355400-173379800	Weak transcription	Pancreas	Pancrea
10	chr1:173356400-173371400	Weak transcription	GM12878-XiMat	blood
11	chr1:173360600-173363000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:173360600-173364000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr1:173360800-173363400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr1:173361000-173361600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr1:173361000-173362000	Weak transcription	A549	lung
16	chr1:173361000-173362200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr1:173361000-173362400	Enhancers	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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