Variant report

Variant	rs73041144
Chromosome Location	chr1:170097092-170097093
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11579254	0.81[AFR][1000 genomes]
rs11588736	0.81[AFR][1000 genomes]
rs2150111	0.81[AFR][1000 genomes]
rs471045	0.85[EUR][1000 genomes]
rs497063	0.83[EUR][1000 genomes]
rs504944	0.86[EUR][1000 genomes]
rs55653977	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55679092	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs59916635	0.81[AFR][1000 genomes]
rs61825352	0.81[AFR][1000 genomes]
rs61825353	0.81[AFR][1000 genomes]
rs61825354	0.81[AFR][1000 genomes]
rs61825358	0.81[AFR][1000 genomes]
rs61825690	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61825691	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61827261	0.83[AFR][1000 genomes]
rs951490	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014033	chr1:169968488-170453021	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
2	nsv535200	chr1:169968488-170453021	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv999310	chr1:170065943-170223350	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:170095400-170097200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:170096200-170100800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:170096200-170100800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr1:170096400-170100400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr1:170096400-170100600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr1:170096400-170100600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr1:170096400-170100800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr1:170096800-170100200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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