Variant report

Variant	rs73042334
Chromosome Location	chr3:25250355-25250356
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs12152294	1.00[AFR][1000 genomes]
rs17517413	1.00[AFR][1000 genomes]
rs17517778	1.00[AFR][1000 genomes]
rs17517875	1.00[AFR][1000 genomes]
rs17518622	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs17576595	1.00[AFR][1000 genomes]
rs17576629	1.00[AFR][1000 genomes]
rs17576864	1.00[AFR][1000 genomes]
rs17577191	1.00[AFR][1000 genomes]
rs17577540	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17578294	0.84[AMR][1000 genomes]
rs55809331	1.00[AFR][1000 genomes]
rs55864034	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs56034169	1.00[AFR][1000 genomes]
rs56127830	1.00[AFR][1000 genomes]
rs56150061	1.00[AFR][1000 genomes]
rs73042350	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs73042352	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs73044253	1.00[AFR][1000 genomes]
rs73044255	1.00[AFR][1000 genomes]
rs73044259	1.00[AFR][1000 genomes]
rs73044279	1.00[AFR][1000 genomes]
rs73044296	1.00[AFR][1000 genomes]
rs73048410	1.00[AFR][1000 genomes]
rs73048413	1.00[AFR][1000 genomes]
rs73048450	1.00[AFR][1000 genomes]
rs73049954	1.00[AFR][1000 genomes]
rs73049956	1.00[AFR][1000 genomes]
rs73050322	1.00[AFR][1000 genomes]
rs73050329	1.00[AFR][1000 genomes]
rs73050336	1.00[AFR][1000 genomes]
rs73050338	1.00[AFR][1000 genomes]
rs73050339	1.00[AFR][1000 genomes]
rs73050340	1.00[AFR][1000 genomes]
rs73050358	1.00[AFR][1000 genomes]
rs73050366	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs73050373	1.00[AFR][1000 genomes]
rs73052497	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs73054309	0.87[AMR][1000 genomes]
rs73054326	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73054328	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv508213	chr3:25206150-25326196	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25250000-25250800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links