Variant report

Variant	rs73042357
Chromosome Location	chr3:25264821-25264822
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs55642444	1.00[AFR][1000 genomes]
rs55864034	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56127830	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73042350	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73042351	0.91[EUR][1000 genomes]
rs73042352	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73042364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73044253	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73044255	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73044259	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73044261	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73044279	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73044296	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73045970	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73045981	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73048430	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
2	nsv508213	chr3:25206150-25326196	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25260200-25265600	Weak transcription	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links