Variant report
| Variant | rs73042364 |
|---|---|
| Chromosome Location | chr3:25265790-25265791 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:25262575..25264631-chr3:25265325..25268274,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs55642444 | 1.00[AFR][1000 genomes] |
| rs55864034 | 0.96[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs56127830 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs73042350 | 0.96[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs73042351 | 0.91[EUR][1000 genomes] |
| rs73042352 | 0.96[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs73042357 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73044253 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs73044255 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs73044259 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs73044261 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs73044279 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs73044296 | 0.89[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs73045970 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs73045981 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs73048430 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949035 | chr3:25194301-26084890 | Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 68 gene(s) | inside rSNPs | diseases |
| 2 | nsv508213 | chr3:25206150-25326196 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:25265600-25266000 | Enhancers | Fetal Heart | heart |
