Variant report

Variant	rs73044337
Chromosome Location	chr3:23204008-23204009
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10510537	0.96[AMR][1000 genomes]
rs13083654	0.81[ASN][1000 genomes]
rs1495132	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17012823	0.91[AMR][1000 genomes]
rs17012834	0.96[AMR][1000 genomes]
rs17012844	0.96[AMR][1000 genomes]
rs17012852	0.96[AMR][1000 genomes]
rs17012861	0.96[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17012927	0.96[AMR][1000 genomes]
rs17012943	0.96[AMR][1000 genomes]
rs17012959	0.96[AMR][1000 genomes]
rs17012969	0.96[AMR][1000 genomes]
rs17012988	0.96[AMR][1000 genomes]
rs17012998	0.96[AMR][1000 genomes]
rs17013023	0.96[AMR][1000 genomes]
rs17013026	0.96[AMR][1000 genomes]
rs17013029	0.96[AMR][1000 genomes]
rs17013035	0.96[AMR][1000 genomes]
rs17013049	0.91[AMR][1000 genomes]
rs2014132	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2291720	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34239585	0.81[ASN][1000 genomes]
rs34259979	0.81[ASN][1000 genomes]
rs35743404	0.81[ASN][1000 genomes]
rs36004369	0.82[ASN][1000 genomes]
rs58844120	0.96[AMR][1000 genomes]
rs59365170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60709653	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73044305	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73044309	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73044318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73044329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73044339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73050236	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73050238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73050257	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73050270	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73050276	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9809194	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999882	chr3:23121533-23257718	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv834636	chr3:23138653-23301443	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23201000-23204200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:23201800-23204600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr3:23202000-23206600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr3:23202400-23204200	Enhancers	NHEK	skin
5	chr3:23202800-23204800	Flanking Active TSS	GM12878-XiMat	blood
6	chr3:23203400-23204200	Enhancers	A549	lung
7	chr3:23203400-23205200	Enhancers	Primary B cells from peripheral blood	blood
8	chr3:23203600-23204200	Enhancers	Hela-S3	cervix
9	chr3:23204000-23204600	Enhancers	Primary B cells from cord blood	blood

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