Variant report

Variant	rs73049845
Chromosome Location	chr1:172930834-172930835
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10489275	1.00[AMR][1000 genomes]
rs16845151	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16845169	1.00[AMR][1000 genomes]
rs4615873	1.00[AMR][1000 genomes]
rs6658802	1.00[AMR][1000 genomes]
rs73046026	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73046030	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7416404	1.00[AMR][1000 genomes]
rs7524172	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7548612	1.00[AMR][1000 genomes]
rs7550854	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7550931	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831904	chr1:172912110-173070429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172929800-172938200	Weak transcription	HSMMtube	muscle
2	chr1:172930000-172931800	Weak transcription	NHDF-Ad	bronchial
3	chr1:172930000-172933800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr1:172930000-172935400	Weak transcription	HUVEC	blood vessel
5	chr1:172930000-172935800	Weak transcription	A549	lung
6	chr1:172930000-172936000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:172930000-172937200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr1:172930200-172933800	Weak transcription	Stomach Mucosa	stomach
9	chr1:172930200-172934200	Weak transcription	Colon Smooth Muscle	Colon
10	chr1:172930200-172935800	Weak transcription	NHLF	lung
11	chr1:172930800-172935800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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