Variant report

Variant	rs73050342
Chromosome Location	chr3:25198604-25198605
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13060347	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13061437	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13068891	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13087919	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13088163	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17517792	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17517931	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17578259	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34112261	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34283888	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34370374	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34960742	0.81[ASN][1000 genomes]
rs35045659	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35069077	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35383710	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66692109	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67093028	0.81[ASN][1000 genomes]
rs71311526	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71622827	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9830836	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013446	chr3:25176609-25221334	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv876631	chr3:25185448-25231571	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25194000-25211800	Weak transcription	Aorta	Aorta
2	chr3:25195000-25198800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:25196400-25199600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:25196800-25200400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:25197000-25199200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:25197200-25198800	Enhancers	HSMM	muscle
7	chr3:25197400-25198800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr3:25197400-25198800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:25197400-25199000	Enhancers	HUVEC	blood vessel
10	chr3:25197600-25198800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr3:25197600-25198800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:25197600-25198800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:25197600-25198800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr3:25197600-25198800	Enhancers	Fetal Lung	lung
15	chr3:25197600-25198800	Enhancers	HMEC	breast
16	chr3:25197600-25205200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr3:25197800-25199200	Enhancers	H1 Cell Line	embryonic stem cell
18	chr3:25197800-25200600	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr3:25198000-25199000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr3:25198200-25198800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr3:25198200-25199400	Enhancers	A549	lung
22	chr3:25198200-25200600	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr3:25198400-25198800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr3:25198400-25198800	Enhancers	HSMMtube	muscle
25	chr3:25198400-25199800	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr3:25198400-25200000	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr3:25198400-25200600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr3:25198400-25200600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr3:25198600-25198800	Enhancers	NH-A	brain
30	chr3:25198600-25199600	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr3:25198600-25201200	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr3:25198600-25201200	Weak transcription	Fetal Heart	heart
33	chr3:25198600-25211200	Weak transcription	Fetal Stomach	stomach

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