Variant report

Variant	rs73052916
Chromosome Location	chr1:194183678-194183679
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1487527	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16836190	1.00[AMR][1000 genomes]
rs16836491	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16836545	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16836597	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56695737	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60277362	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60574560	1.00[AMR][1000 genomes]
rs60860075	1.00[AMR][1000 genomes]
rs73052905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73052919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73052931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73052935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73052944	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73053002	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73055004	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73055015	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73056909	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73056916	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73056918	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73056925	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73056944	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73064707	1.00[AMR][1000 genomes]
rs73064728	1.00[AMR][1000 genomes]
rs73070728	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73070733	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73070741	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73070750	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73070753	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73070757	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73070766	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv872834	chr1:193889533-194482304	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1001872	chr1:194030479-194288016	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv832181	chr1:194089117-194255615	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv872837	chr1:194106280-194221509	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1004338	chr1:194143315-194381135	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3415356	chr1:194180429-194184127	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:194159400-194195200	Weak transcription	Thymus	Thymus
2	chr1:194176000-194189200	Weak transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links