Variant report

Variant	rs73052944
Chromosome Location	chr1:194198498-194198499
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1487527	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16836190	1.00[AMR][1000 genomes]
rs16836491	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16836545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16836597	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56695737	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60277362	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60574560	1.00[AMR][1000 genomes]
rs60860075	1.00[AMR][1000 genomes]
rs73052905	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73052916	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73052919	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73052931	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73052935	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73053002	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73055004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73055015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73056909	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73056916	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73056918	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73056925	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73056944	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73064707	1.00[AMR][1000 genomes]
rs73064728	1.00[AMR][1000 genomes]
rs73070728	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73070733	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73070741	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73070750	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73070753	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73070757	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73070766	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv872834	chr1:193889533-194482304	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1001872	chr1:194030479-194288016	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv832181	chr1:194089117-194255615	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv872837	chr1:194106280-194221509	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1004338	chr1:194143315-194381135	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:194195600-194199200	Weak transcription	Thymus	Thymus
2	chr1:194196000-194199400	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr1:194196200-194209800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr1:194196400-194206200	Weak transcription	Primary T cells from cord blood	blood
5	chr1:194197400-194199000	Weak transcription	Fetal Thymus	thymus

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