Variant report

Variant	rs73056357
Chromosome Location	chr1:195684162-195684163
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:195679626..195682310-chr1:195683453..195684980,2	K562	blood:
2	chr1:195385198..195387219-chr1:195683079..195685011,2	K562	blood:
3	chr1:195681664..195684653-chr1:195687722..195689895,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12061613	1.00[EUR][1000 genomes]
rs16838961	1.00[EUR][1000 genomes]
rs56742030	1.00[EUR][1000 genomes]
rs57057259	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58467507	1.00[EUR][1000 genomes]
rs59718710	1.00[EUR][1000 genomes]
rs6658165	1.00[EUR][1000 genomes]
rs6676482	1.00[EUR][1000 genomes]
rs6690674	1.00[EUR][1000 genomes]
rs73056343	1.00[EUR][1000 genomes]
rs73056346	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73056348	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73056369	0.90[AFR][1000 genomes]
rs73056370	0.90[AFR][1000 genomes]
rs73060547	1.00[EUR][1000 genomes]
rs73060549	1.00[EUR][1000 genomes]
rs73060550	1.00[EUR][1000 genomes]
rs73060553	1.00[EUR][1000 genomes]
rs73060560	1.00[EUR][1000 genomes]
rs73060569	1.00[EUR][1000 genomes]
rs73060572	1.00[EUR][1000 genomes]
rs73065150	1.00[EUR][1000 genomes]
rs73068324	1.00[EUR][1000 genomes]
rs73071004	1.00[EUR][1000 genomes]
rs73071007	1.00[EUR][1000 genomes]
rs73071048	1.00[EUR][1000 genomes]
rs73071050	1.00[EUR][1000 genomes]
rs73071052	1.00[EUR][1000 genomes]
rs73071054	1.00[EUR][1000 genomes]
rs73071058	1.00[EUR][1000 genomes]
rs74135147	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872894	chr1:195053221-195745968	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1009307	chr1:195368381-195726703	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv872932	chr1:195447286-195736070	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1004171	chr1:195470205-195687680	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv872937	chr1:195493538-195849028	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv997435	chr1:195567159-195687680	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv947460	chr1:195646625-195689578	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv467271	chr1:195649363-195687201	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv548717	chr1:195649363-195687201	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1007203	chr1:195672857-195902360	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:195682000-195686800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr1:195682800-195684800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr1:195683000-195684600	Enhancers	Primary hematopoietic stem cells	blood
4	chr1:195683000-195684800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr1:195683000-195685000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr1:195683600-195684200	Enhancers	A549	lung
7	chr1:195683600-195684600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr1:195683600-195684800	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr1:195683600-195684800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr1:195683600-195684800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr1:195683800-195684600	Enhancers	NHDF-Ad	bronchial
12	chr1:195683800-195684800	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr1:195684000-195684600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr1:195684000-195685000	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr1:195684000-195685000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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