Variant report

Variant	rs73058546
Chromosome Location	chr1:195713615-195713616
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16838829	1.00[AMR][1000 genomes]
rs16838837	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16838916	1.00[EUR][1000 genomes]
rs16838920	1.00[EUR][1000 genomes]
rs4373737	1.00[EUR][1000 genomes]
rs56838594	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58752338	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61007558	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73056351	1.00[AMR][1000 genomes]
rs73056360	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73056367	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73056377	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73058534	0.85[AFR][1000 genomes]
rs73058539	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73058540	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73058547	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872894	chr1:195053221-195745968	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1009307	chr1:195368381-195726703	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv872932	chr1:195447286-195736070	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv872937	chr1:195493538-195849028	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1007203	chr1:195672857-195902360	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:195711600-195714800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr1:195713200-195713800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:195713400-195713800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:195713600-195713800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:195713600-195714400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr1:195713600-195714400	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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