Variant report

Variant	rs73062160
Chromosome Location	chr5:15868526-15868527
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16867790	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16867796	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16867806	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16867819	1.00[AMR][1000 genomes]
rs2174438	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55896316	0.80[AFR][1000 genomes]
rs6894588	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73062124	0.80[AFR][1000 genomes]
rs73062151	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7713929	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1028089	chr5:15636285-15883910	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv537676	chr5:15636285-15883910	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv880755	chr5:15670377-15938553	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1031483	chr5:15738485-15926083	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv461986	chr5:15854098-15943683	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
7	nsv597292	chr5:15854098-15943683	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
8	nsv830216	chr5:15860662-16060420	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15851800-15870400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:15861200-15870000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr5:15865400-15879400	Weak transcription	Aorta	Aorta
4	chr5:15865600-15869000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr5:15865600-15885000	Weak transcription	Ovary	ovary
6	chr5:15865800-15868800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr5:15865800-15869200	Weak transcription	Brain Hippocampus Middle	brain
8	chr5:15865800-15869600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr5:15866000-15869800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr5:15866200-15869600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:15866200-15870800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr5:15866400-15872600	Weak transcription	Fetal Heart	heart
13	chr5:15868400-15869000	ZNF genes & repeats	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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