Variant report

Variant	rs73063916
Chromosome Location	chr2:210887194-210887195
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:210885661..210890903-chr2:210891500..210895427,5	K562	blood:
2	chr2:210884547..210887523-chr2:210894663..210896392,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RPE-3	chr2:210887131-210889246	NONHSAT076663

Variant related genes	Relation type
ENSG00000272807	Chromatin interaction
ENSG00000229127	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10048697	0.82[AFR][1000 genomes]
rs1111193	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1990513	0.84[AFR][1000 genomes]
rs2192323	0.82[AFR][1000 genomes]
rs2539868	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2539872	1.00[AMR][1000 genomes]
rs2887881	0.84[AFR][1000 genomes]
rs57875655	1.00[AMR][1000 genomes]
rs58282165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58931716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6739292	0.82[AFR][1000 genomes]
rs73063910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73063929	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73063940	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73063945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73063963	0.90[AFR][1000 genomes]
rs73065813	0.84[AFR][1000 genomes]
rs73065817	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431969	chr2:210682494-211074494	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1004426	chr2:210709999-211001680	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv1795338	chr2:210758078-211098113	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210868000-210920000	Weak transcription	Spleen	Spleen
2	chr2:210868400-210899000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:210869400-210891400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:210870800-210890000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr2:210871000-210889400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr2:210871000-210893800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr2:210871200-210889200	Strong transcription	Primary B cells from peripheral blood	blood
8	chr2:210871200-210893000	Strong transcription	Dnd41	blood
9	chr2:210871200-210893200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr2:210871200-210911400	Weak transcription	Psoas Muscle	Psoas
11	chr2:210871600-210891800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr2:210871800-210890600	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr2:210872400-210890000	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr2:210872400-210893800	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr2:210872600-210891400	Strong transcription	Fetal Thymus	thymus
16	chr2:210872600-210907600	Weak transcription	Stomach Mucosa	stomach
17	chr2:210872800-210889200	Strong transcription	Fetal Muscle Trunk	muscle
18	chr2:210872800-210890800	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr2:210872800-210894200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr2:210873000-210890200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr2:210873000-210893800	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr2:210873200-210889400	Strong transcription	Fetal Lung	lung
23	chr2:210873400-210891600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr2:210873600-210891400	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr2:210873800-210889000	Strong transcription	Primary B cells from cord blood	blood
26	chr2:210874000-210890000	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr2:210874000-210920800	Weak transcription	Fetal Heart	heart
28	chr2:210874200-210893800	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr2:210874400-210888400	Strong transcription	HepG2	liver
30	chr2:210874400-210891400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr2:210874600-210890800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr2:210875000-210889200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
33	chr2:210875000-210893200	Strong transcription	Liver	Liver
34	chr2:210875400-210889000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr2:210875800-210889200	Strong transcription	GM12878-XiMat	blood
36	chr2:210875800-210890000	Strong transcription	Rectal Mucosa Donor 29	rectum
37	chr2:210875800-210891200	Strong transcription	HSMM	muscle
38	chr2:210875800-210891400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr2:210876000-210891000	Strong transcription	Placenta	Placenta
40	chr2:210877200-210891400	Strong transcription	Adipose Nuclei	Adipose
41	chr2:210878000-210888600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr2:210878000-210889000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr2:210878200-210889200	Strong transcription	Primary T cells from cord blood	blood
44	chr2:210878200-210891000	Strong transcription	Skeletal Muscle Female	skeletal muscle
45	chr2:210878400-210890400	Strong transcription	Osteobl	bone
46	chr2:210878600-210887600	Strong transcription	H1 Cell Line	embryonic stem cell
47	chr2:210878600-210890800	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr2:210878600-210891800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr2:210879000-210889200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr2:210879000-210889200	Strong transcription	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links