Variant report

Variant	rs73067455
Chromosome Location	chr1:210877164-210877165
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs58497140	0.81[AFR][1000 genomes]
rs59540052	1.00[EUR][1000 genomes]
rs59663537	0.81[AFR][1000 genomes]
rs60954989	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73067432	1.00[EUR][1000 genomes]
rs73067433	1.00[EUR][1000 genomes]
rs73067442	1.00[EUR][1000 genomes]
rs73067447	1.00[EUR][1000 genomes]
rs73067449	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873150	chr1:210808270-210893233	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210838000-210880400	Weak transcription	Gastric	stomach
2	chr1:210846400-210884600	Weak transcription	Ovary	ovary
3	chr1:210857200-210882600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:210858000-210880400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:210864400-210889800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:210866800-210884800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr1:210869800-210882600	Weak transcription	Brain Anterior Caudate	brain
8	chr1:210870400-210879400	Weak transcription	A549	lung
9	chr1:210871200-210932000	Weak transcription	HSMM	muscle
10	chr1:210872000-210879200	Weak transcription	Brain Hippocampus Middle	brain
11	chr1:210873800-210880600	Weak transcription	Pancreas	Pancrea
12	chr1:210874200-210878200	Weak transcription	Fetal Stomach	stomach
13	chr1:210874200-210887400	Weak transcription	HSMMtube	muscle
14	chr1:210875000-210879000	Weak transcription	Liver	Liver
15	chr1:210875200-210877200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr1:210876200-210881200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr1:210876800-210877400	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr1:210876800-210879000	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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