Variant report

Variant	rs73069379
Chromosome Location	chr2:212665073-212665074
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11897075	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56005945	1.00[ASN][1000 genomes]
rs57828323	1.00[ASN][1000 genomes]
rs58905892	1.00[ASN][1000 genomes]
rs59605575	1.00[ASN][1000 genomes]
rs62182981	1.00[ASN][1000 genomes]
rs6733874	1.00[ASN][1000 genomes]
rs73069331	1.00[ASN][1000 genomes]
rs73085038	1.00[ASN][1000 genomes]
rs73085039	1.00[ASN][1000 genomes]
rs73085065	1.00[ASN][1000 genomes]
rs73085068	1.00[ASN][1000 genomes]
rs7569623	1.00[ASN][1000 genomes]
rs7593089	1.00[ASN][1000 genomes]
rs9784129	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv875784	chr2:212639948-212761152	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212664600-212665200	Enhancers	Brain Cingulate Gyrus	brain
2	chr2:212664600-212665600	Enhancers	Brain Substantia Nigra	brain
3	chr2:212665000-212665200	Flanking Active TSS	Brain Anterior Caudate	brain
4	chr2:212665000-212665400	Active TSS	Brain Hippocampus Middle	brain
5	chr2:212665000-212665600	Active TSS	Brain Inferior Temporal Lobe	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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