Variant report

Variant	rs73072839
Chromosome Location	chr1:211641303-211641304
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10732682	0.85[EUR][1000 genomes]
rs10779554	0.85[EUR][1000 genomes]
rs1084982	0.85[EUR][1000 genomes]
rs1084983	0.88[EUR][1000 genomes]
rs1084986	0.81[EUR][1000 genomes]
rs10863886	0.85[EUR][1000 genomes]
rs10863887	0.85[EUR][1000 genomes]
rs11804635	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1533219	0.81[EUR][1000 genomes]
rs1533220	0.92[EUR][1000 genomes]
rs1663521	0.92[EUR][1000 genomes]
rs1707247	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1707252	0.92[EUR][1000 genomes]
rs1707266	0.92[EUR][1000 genomes]
rs1707267	0.84[EUR][1000 genomes]
rs1877476	0.88[EUR][1000 genomes]
rs1983259	0.85[EUR][1000 genomes]
rs2358215	0.81[EUR][1000 genomes]
rs2995846	0.84[EUR][1000 genomes]
rs3123302	0.92[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs3855878	0.85[EUR][1000 genomes]
rs4347268	0.85[EUR][1000 genomes]
rs4370817	0.85[EUR][1000 genomes]
rs4556425	0.85[EUR][1000 genomes]
rs4951517	0.85[EUR][1000 genomes]
rs4951735	0.85[EUR][1000 genomes]
rs4951737	0.85[EUR][1000 genomes]
rs4951738	0.81[EUR][1000 genomes]
rs4951739	0.85[EUR][1000 genomes]
rs4951740	0.81[EUR][1000 genomes]
rs6540675	0.85[EUR][1000 genomes]
rs6540676	0.85[EUR][1000 genomes]
rs6540678	0.85[EUR][1000 genomes]
rs6663627	0.85[EUR][1000 genomes]
rs6671526	0.85[EUR][1000 genomes]
rs6672233	0.84[EUR][1000 genomes]
rs6688682	0.85[EUR][1000 genomes]
rs6692815	0.85[EUR][1000 genomes]
rs7517135	0.85[EUR][1000 genomes]
rs7527620	0.84[EUR][1000 genomes]
rs7529964	0.85[EUR][1000 genomes]
rs784366	0.85[EUR][1000 genomes]
rs784367	0.88[EUR][1000 genomes]
rs784368	0.88[EUR][1000 genomes]
rs784370	0.92[EUR][1000 genomes]
rs784371	0.81[EUR][1000 genomes]
rs784373	0.88[EUR][1000 genomes]
rs784374	0.88[EUR][1000 genomes]
rs784375	0.88[EUR][1000 genomes]
rs784378	0.92[EUR][1000 genomes]
rs784380	0.92[EUR][1000 genomes]
rs784381	0.92[EUR][1000 genomes]
rs784387	0.84[EUR][1000 genomes]
rs784388	0.94[AFR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832514	chr1:211630247-211794963	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211641000-211643400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:211641000-211643800	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr1:211641000-211644000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr1:211641000-211644000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr1:211641200-211643200	Enhancers	Primary hematopoietic stem cells	blood

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