Variant report

Variant	rs73072846
Chromosome Location	chr1:211644618-211644619
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10159027	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12057566	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56032913	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56105820	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56197256	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59256122	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072847	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072849	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072853	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7354818	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7354876	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7355003	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7355098	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7355103	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7355184	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7355185	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7355215	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74138748	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74138754	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74138755	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74138756	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74138757	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74138758	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs74138763	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7529964	0.89[EUR][1000 genomes]
rs9308420	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832514	chr1:211630247-211794963	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211643600-211647200	Weak transcription	K562	blood
2	chr1:211643600-211656200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:211643800-211646000	Weak transcription	Placenta	Placenta
4	chr1:211643800-211646800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr1:211643800-211647200	Weak transcription	Gastric	stomach
6	chr1:211643800-211647200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr1:211643800-211647200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr1:211643800-211647200	Weak transcription	A549	lung
9	chr1:211643800-211647400	Weak transcription	Fetal Muscle Leg	muscle
10	chr1:211643800-211647400	Weak transcription	Psoas Muscle	Psoas
11	chr1:211643800-211647400	Weak transcription	Right Atrium	heart
12	chr1:211643800-211647400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr1:211643800-211647600	Weak transcription	Adipose Nuclei	Adipose
14	chr1:211643800-211652400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr1:211644000-211646800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr1:211644600-211645200	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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