Variant report

Variant	rs73074724
Chromosome Location	chr2:210588082-210588083
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73071062	1.00[AFR][1000 genomes]
rs73072896	1.00[AFR][1000 genomes]
rs73074710	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875765	chr2:210537660-210618203	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1009129	chr2:210550858-210681136	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210537000-210596800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr2:210541800-210596400	Weak transcription	Gastric	stomach
3	chr2:210544000-210596600	Weak transcription	Ovary	ovary
4	chr2:210544400-210598600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr2:210552800-210599400	Weak transcription	Pancreas	Pancrea
6	chr2:210555600-210600200	Weak transcription	Left Ventricle	heart
7	chr2:210558000-210598600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr2:210559600-210588400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:210562400-210593600	Weak transcription	Fetal Brain Male	brain
10	chr2:210571800-210598600	Weak transcription	Brain Substantia Nigra	brain
11	chr2:210581000-210600600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr2:210585000-210600000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:210586400-210589400	Weak transcription	Esophagus	oesophagus
14	chr2:210586400-210590600	Weak transcription	NHEK	skin
15	chr2:210586400-210591400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr2:210586600-210591400	Weak transcription	HMEC	breast
17	chr2:210586600-210599600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr2:210586800-210589800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr2:210586800-210595400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr2:210586800-210599800	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr2:210587000-210590600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr2:210587200-210589800	Strong transcription	Brain Germinal Matrix	brain
23	chr2:210587600-210589400	Strong transcription	Aorta	Aorta
24	chr2:210587600-210589800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr2:210587600-210592400	Strong transcription	Fetal Brain Female	brain
26	chr2:210587800-210589600	Strong transcription	Brain Angular Gyrus	brain
27	chr2:210587800-210590600	Strong transcription	Brain Anterior Caudate	brain

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