Variant report

Variant	rs73075539
Chromosome Location	chr3:46640797-46640798
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1520492	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1520494	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17078977	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1829538	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2176862	0.95[ASN][1000 genomes]
rs55740502	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57417282	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58599738	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58647844	0.94[ASN][1000 genomes]
rs73075520	0.94[ASN][1000 genomes]
rs73075538	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075540	0.96[ASN][1000 genomes]
rs73075542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73075543	0.96[ASN][1000 genomes]
rs73075555	0.94[ASN][1000 genomes]
rs73075561	0.94[ASN][1000 genomes]
rs73075569	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013306	chr3:46469014-46698538	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv876738	chr3:46639048-46680063	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46628800-46651000	Weak transcription	Right Atrium	heart
2	chr3:46634800-46650800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:46635000-46641400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:46638600-46644800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:46640200-46641800	Enhancers	H9 Cell Line	embryonic stem cell
6	chr3:46640200-46641800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr3:46640200-46641800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr3:46640200-46641800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr3:46640200-46641800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:46640200-46642000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr3:46640200-46642000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:46640200-46642400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr3:46640400-46641000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr3:46640400-46641200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
15	chr3:46640400-46641800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr3:46640400-46642000	Enhancers	H1 Cell Line	embryonic stem cell
17	chr3:46640600-46644400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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