Variant report

Variant	rs7307686
Chromosome Location	chr12:86409495-86409496
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NTS-2	chr12:86409475-86410219	NONHSAT029761

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10082857	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10779224	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10779225	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10779227	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10863113	0.84[EUR][1000 genomes]
rs10863128	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10863129	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10863131	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11117124	0.84[EUR][1000 genomes]
rs11117148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11117149	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11117150	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11513955	0.91[ASN][1000 genomes]
rs11608539	0.80[EUR][1000 genomes]
rs11615948	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12298516	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1847206	0.91[ASN][1000 genomes]
rs61931064	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61931120	1.00[ASN][1000 genomes]
rs61931121	1.00[ASN][1000 genomes]
rs6539944	0.91[ASN][1000 genomes]
rs6539947	0.87[ASN][1000 genomes]
rs7135154	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7136221	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs721829	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7295033	0.83[ASN][1000 genomes]
rs7398950	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7485853	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7961367	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7965726	0.87[ASN][1000 genomes]
rs7971447	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7976573	0.80[EUR][1000 genomes]
rs839091	0.87[ASN][1000 genomes]
rs9651977	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9738989	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049179	chr12:86056376-86799188	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv1797806	chr12:86198935-86425608	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv559667	chr12:86318004-86416212	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv832476	chr12:86389751-86497122	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
5	nsv798	chr12:86399822-86447451	ZNF genes & repeats Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
6	nsv975619	chr12:86404933-86424490	Inactive region	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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