Variant report

Variant	rs7307833
Chromosome Location	chr12:123611248-123611249
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:123609913..123612055-chr12:123613874..123616292,2	K562	blood:
2	chr12:123604029..123607309-chr12:123609256..123611485,3	K562	blood:
3	chr12:123609922..123611870-chr12:123629946..123632018,2	K562	blood:
4	chr12:123609306..123612030-chr12:123621213..123623739,2	K562	blood:
5	chr12:123577013..123578546-chr12:123609752..123612251,2	K562	blood:
6	chr12:123602721..123605164-chr12:123609329..123611695,2	MCF-7	breast:
7	chr12:123544642..123548641-chr12:123611003..123613032,3	K562	blood:
8	chr12:123610238..123613639-chr12:123613854..123616666,3	K562	blood:
9	chr12:123603321..123605934-chr12:123608527..123611657,3	K562	blood:

No data

Extended variants
information (count: 17 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11061612	0.83[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.81[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11834598	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12310205	0.83[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12313619	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12317784	0.83[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12318090	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1533703	1.00[JPT][hapmap]
rs6489253	0.81[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6650207	0.83[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7953918	0.83[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3388790	chr12:123275902-123655103	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv517200	chr12:123312051-123654498	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv427924	chr12:123412172-123722059	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
4	nsv1042550	chr12:123532028-123659500	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	esv1825473	chr12:123582855-123822503	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	nsv870326	chr12:123585990-123719323	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
7	esv3405030	chr12:123610199-123614397	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7307833	SBNO1	cis	lymphoblastoid	seeQTL
rs7307833	VPS37B	cis	lymphoblastoid	seeQTL

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:123594600-123634000	Weak transcription	Brain Germinal Matrix	brain
2	chr12:123599200-123624600	Weak transcription	Fetal Brain Female	brain
3	chr12:123601600-123615800	Weak transcription	Pancreas	Pancrea
4	chr12:123605000-123616000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr12:123605800-123614200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr12:123605800-123624400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr12:123606000-123614600	Weak transcription	Colonic Mucosa	Colon
8	chr12:123607600-123619600	Genic enhancers	Fetal Thymus	thymus
9	chr12:123608000-123614200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr12:123608400-123614200	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr12:123610000-123620400	Enhancers	Placenta	Placenta
12	chr12:123610400-123613000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr12:123610600-123611400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr12:123610600-123611400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr12:123610600-123611400	Enhancers	HSMM	muscle
16	chr12:123610600-123611400	Enhancers	NH-A	brain
17	chr12:123610600-123611400	Enhancers	Osteobl	bone
18	chr12:123610600-123611600	Enhancers	Fetal Stomach	stomach
19	chr12:123610600-123612000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr12:123610600-123612000	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr12:123610600-123612000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr12:123610600-123612000	Enhancers	HepG2	liver
23	chr12:123610600-123612000	Enhancers	HUVEC	blood vessel
24	chr12:123610600-123612200	Enhancers	Rectal Smooth Muscle	rectum
25	chr12:123610600-123612600	Enhancers	Adipose Nuclei	Adipose
26	chr12:123610600-123612600	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr12:123610600-123612600	Enhancers	NHEK	skin
28	chr12:123610600-123612600	Enhancers	NHLF	lung
29	chr12:123610600-123612800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr12:123610600-123612800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr12:123610600-123612800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr12:123610600-123612800	Enhancers	HMEC	breast
33	chr12:123610600-123613000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr12:123610600-123614400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr12:123610800-123611400	Enhancers	iPS-20b Cell Line	embryonic stem cell
36	chr12:123610800-123611400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
37	chr12:123610800-123611400	Enhancers	HSMMtube	muscle
38	chr12:123610800-123611600	Enhancers	H9 Cell Line	embryonic stem cell
39	chr12:123610800-123611600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr12:123610800-123611600	Enhancers	Brain Cingulate Gyrus	brain
41	chr12:123610800-123611600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr12:123610800-123611600	Enhancers	Brain Substantia Nigra	brain
43	chr12:123610800-123611600	Enhancers	Pancreatic Islets	Pancreatic Islet
44	chr12:123610800-123611600	Enhancers	Ovary	ovary
45	chr12:123610800-123611600	Genic enhancers	Thymus	Thymus
46	chr12:123610800-123611800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr12:123610800-123611800	Enhancers	HUES6 Cell Line	embryonic stem cell
48	chr12:123610800-123611800	Enhancers	Primary hematopoietic stem cells short term culture	blood
49	chr12:123610800-123611800	Enhancers	Primary T helper cells PMA-I stimulated	--
50	chr12:123610800-123611800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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