Variant report

Variant	rs73078916
Chromosome Location	chr2:210737289-210737290
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10174744	1.00[EUR][1000 genomes]
rs16843887	1.00[EUR][1000 genomes]
rs16843890	1.00[EUR][1000 genomes]
rs6707821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73076772	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73076801	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431969	chr2:210682494-211074494	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1004426	chr2:210709999-211001680	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210682000-210769600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr2:210727800-210737400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr2:210733200-210791400	Weak transcription	Brain Angular Gyrus	brain
4	chr2:210735400-210769400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr2:210736800-210737600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:210737000-210737800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr2:210737000-210738400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr2:210737000-210738400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr2:210737000-210738800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr2:210737200-210737400	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr2:210737200-210737400	Enhancers	Brain Anterior Caudate	brain
12	chr2:210737200-210737600	Flanking Active TSS	NH-A	brain
13	chr2:210737200-210737800	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr2:210737200-210737800	Enhancers	Brain Germinal Matrix	brain
15	chr2:210737200-210738000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr2:210737200-210738600	Enhancers	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links