Variant report

Variant	rs73081624
Chromosome Location	chr3:54350570-54350571
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11716076	0.84[AFR][1000 genomes]
rs2067965	0.85[ASN][1000 genomes]
rs55719230	0.85[ASN][1000 genomes]
rs55740446	0.85[ASN][1000 genomes]
rs55773956	0.85[ASN][1000 genomes]
rs55835864	0.84[ASN][1000 genomes]
rs55865290	0.85[ASN][1000 genomes]
rs55885947	0.85[ASN][1000 genomes]
rs56053256	0.92[ASN][1000 genomes]
rs73081608	0.85[ASN][1000 genomes]
rs73081609	0.85[ASN][1000 genomes]
rs73081612	0.85[ASN][1000 genomes]
rs73081614	0.85[ASN][1000 genomes]
rs73081633	0.92[ASN][1000 genomes]
rs73081641	0.92[ASN][1000 genomes]
rs73081646	0.92[ASN][1000 genomes]
rs73081650	0.92[ASN][1000 genomes]
rs73091541	0.85[ASN][1000 genomes]
rs73091546	0.85[ASN][1000 genomes]
rs73091548	0.85[ASN][1000 genomes]
rs73091561	0.85[ASN][1000 genomes]
rs73093653	0.85[ASN][1000 genomes]
rs73093654	0.85[ASN][1000 genomes]
rs73093659	0.85[ASN][1000 genomes]
rs73093664	0.85[ASN][1000 genomes]
rs73093666	0.85[ASN][1000 genomes]
rs7427616	0.85[ASN][1000 genomes]
rs7429698	0.85[ASN][1000 genomes]
rs7431401	0.85[ASN][1000 genomes]
rs7431512	0.85[ASN][1000 genomes]
rs7431992	0.84[AFR][1000 genomes]
rs7433571	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv817328	chr3:54250314-54380438	Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54344000-54360800	Weak transcription	Psoas Muscle	Psoas
2	chr3:54349800-54355600	Weak transcription	Ovary	ovary
3	chr3:54350400-54350600	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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