Variant report

Variant	rs7308302
Chromosome Location	chr12:63136043-63136044
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:63129972..63133446-chr12:63133906..63136834,3	MCF-7	breast:
2	chr12:63128547..63131269-chr12:63134912..63137198,2	K562	blood:
3	chr12:63131446..63134061-chr12:63135870..63138526,3	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10877911	0.87[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11174620	0.83[CHB][hapmap];0.85[JPT][hapmap]
rs11174621	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11174626	0.87[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12315418	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7135080	0.87[CEU][hapmap];0.81[CHB][hapmap]
rs7295577	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7312352	0.88[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7954555	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7970056	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7308302	ARHGAP9	cis	parietal	SCAN

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63096600-63157000	Weak transcription	Pancreas	Pancrea
2	chr12:63123000-63152000	Weak transcription	Gastric	stomach
3	chr12:63123200-63137400	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr12:63124200-63145400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr12:63125600-63138400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr12:63125800-63143000	Weak transcription	Psoas Muscle	Psoas
7	chr12:63126000-63138400	Weak transcription	Left Ventricle	heart
8	chr12:63126000-63149200	Weak transcription	Lung	lung
9	chr12:63126200-63138600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr12:63126200-63155600	Weak transcription	Aorta	Aorta
11	chr12:63127600-63137800	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr12:63130000-63138400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr12:63130200-63153200	Weak transcription	Fetal Intestine Large	intestine
14	chr12:63131400-63138200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr12:63131400-63138400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr12:63131400-63138400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr12:63131400-63148000	Weak transcription	Fetal Intestine Small	intestine
18	chr12:63132200-63136400	Enhancers	Brain Substantia Nigra	brain
19	chr12:63132600-63140600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr12:63132600-63145400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr12:63133200-63136200	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr12:63133200-63138600	Weak transcription	HepG2	liver
23	chr12:63133600-63136400	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr12:63133600-63144800	Weak transcription	Brain Anterior Caudate	brain
25	chr12:63133800-63138400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr12:63133800-63138400	Weak transcription	HSMMtube	muscle
27	chr12:63133800-63138400	Weak transcription	NHDF-Ad	bronchial
28	chr12:63133800-63143000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr12:63134000-63138200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr12:63134000-63138200	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr12:63134200-63138200	Weak transcription	Osteobl	bone
32	chr12:63134200-63138400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr12:63134200-63138400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr12:63134200-63138600	Weak transcription	HSMM	muscle
35	chr12:63134200-63145000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr12:63134200-63150600	Weak transcription	Right Atrium	heart
37	chr12:63134400-63138200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr12:63134400-63138400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr12:63134400-63138400	Weak transcription	A549	lung
40	chr12:63134400-63139200	Weak transcription	Thymus	Thymus
41	chr12:63134400-63141400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr12:63134400-63144600	Weak transcription	Brain Cingulate Gyrus	brain
43	chr12:63134400-63160600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr12:63135000-63142200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr12:63135200-63138600	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr12:63135600-63145000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr12:63135800-63138400	Weak transcription	Brain Hippocampus Middle	brain
48	chr12:63135800-63138600	Weak transcription	Fetal Thymus	thymus
49	chr12:63136000-63136600	Enhancers	HUES64 Cell Line	embryonic stem cell
50	chr12:63136000-63142600	Weak transcription	Brain Angular Gyrus	brain

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