Variant report

Variant	rs73083440
Chromosome Location	chr1:215678705-215678706
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs58411583	0.89[AFR][1000 genomes]
rs59214288	0.87[AFR][1000 genomes]
rs59654382	0.87[AFR][1000 genomes]
rs59962254	0.87[AFR][1000 genomes]
rs6672523	0.87[AFR][1000 genomes]
rs6695032	1.00[AFR][1000 genomes]
rs73083424	0.87[AFR][1000 genomes]
rs73083434	0.87[AFR][1000 genomes]
rs73083442	1.00[AFR][1000 genomes]
rs73083444	1.00[AFR][1000 genomes]
rs73083450	0.87[AFR][1000 genomes]
rs73083453	0.87[AFR][1000 genomes]
rs73083460	0.87[AFR][1000 genomes]
rs73083463	1.00[AFR][1000 genomes]
rs73083467	0.87[AFR][1000 genomes]
rs73083482	1.00[AFR][1000 genomes]
rs73083485	1.00[AFR][1000 genomes]
rs73083488	1.00[AFR][1000 genomes]
rs73083493	0.89[AFR][1000 genomes]
rs73083496	0.89[AFR][1000 genomes]
rs73083498	0.89[AFR][1000 genomes]
rs73083500	0.89[AFR][1000 genomes]
rs73085420	0.87[AFR][1000 genomes]
rs73085444	0.87[AFR][1000 genomes]
rs73085451	0.87[AFR][1000 genomes]
rs73085460	0.87[AFR][1000 genomes]
rs73087422	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832537	chr1:215509026-215705105	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1796390	chr1:215561548-215799074	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1014266	chr1:215573051-215730838	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv430324	chr1:215649163-216082605	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215676800-215680200	Weak transcription	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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