Variant report
| Variant | rs73083463 |
|---|---|
| Chromosome Location | chr1:215700024-215700025 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:6 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:214832277..214832863-chr1:215699611..215700462,2 | MCF-7 | breast: | |
| 2 | chr1:215699301..215700324-chr1:215779613..215780228,4 | MCF-7 | breast: | |
| 3 | chr1:214506031..214506834-chr1:215699653..215700161,2 | K562 | blood: | |
| 4 | chr1:215699599..215700316-chr1:215779687..215780673,3 | MCF-7 | breast: | |
| 5 | chr1:214981637..214982339-chr1:215699719..215700718,2 | MCF-7 | breast: | |
| 6 | chr1:214833894..214834885-chr1:215699492..215700543,5 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs58411583 | 0.89[AFR][1000 genomes] |
| rs59214288 | 0.87[AFR][1000 genomes] |
| rs59654382 | 0.87[AFR][1000 genomes] |
| rs59962254 | 0.87[AFR][1000 genomes] |
| rs6672523 | 0.87[AFR][1000 genomes] |
| rs6695032 | 1.00[AFR][1000 genomes] |
| rs73083424 | 0.87[AFR][1000 genomes] |
| rs73083434 | 0.87[AFR][1000 genomes] |
| rs73083440 | 1.00[AFR][1000 genomes] |
| rs73083442 | 1.00[AFR][1000 genomes] |
| rs73083444 | 1.00[AFR][1000 genomes] |
| rs73083450 | 0.87[AFR][1000 genomes] |
| rs73083453 | 0.87[AFR][1000 genomes] |
| rs73083460 | 0.87[AFR][1000 genomes] |
| rs73083467 | 0.87[AFR][1000 genomes] |
| rs73083482 | 1.00[AFR][1000 genomes] |
| rs73083485 | 1.00[AFR][1000 genomes] |
| rs73083488 | 1.00[AFR][1000 genomes] |
| rs73083493 | 0.89[AFR][1000 genomes] |
| rs73083496 | 0.89[AFR][1000 genomes] |
| rs73083498 | 0.89[AFR][1000 genomes] |
| rs73083500 | 0.89[AFR][1000 genomes] |
| rs73085420 | 0.87[AFR][1000 genomes] |
| rs73085444 | 0.87[AFR][1000 genomes] |
| rs73085451 | 0.87[AFR][1000 genomes] |
| rs73085460 | 0.87[AFR][1000 genomes] |
| rs73087422 | 0.87[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832537 | chr1:215509026-215705105 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | esv1796390 | chr1:215561548-215799074 | Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv1014266 | chr1:215573051-215730838 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv430324 | chr1:215649163-216082605 | Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:215697600-215702000 | Weak transcription | Fetal Kidney | kidney |
| 2 | chr1:215697600-215702200 | Weak transcription | NHDF-Ad | bronchial |
| 3 | chr1:215697800-215702400 | Weak transcription | Muscle Satellite Cultured Cells | -- |
