Variant report

Variant	rs73083488
Chromosome Location	chr1:215719099-215719100
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:215718496..215720254-chr1:215739655..215742103,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136636	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs58411583	0.89[AFR][1000 genomes]
rs59214288	0.87[AFR][1000 genomes]
rs59654382	0.87[AFR][1000 genomes]
rs59962254	0.87[AFR][1000 genomes]
rs6672523	0.87[AFR][1000 genomes]
rs6695032	1.00[AFR][1000 genomes]
rs73083424	0.87[AFR][1000 genomes]
rs73083434	0.87[AFR][1000 genomes]
rs73083440	1.00[AFR][1000 genomes]
rs73083442	1.00[AFR][1000 genomes]
rs73083444	1.00[AFR][1000 genomes]
rs73083450	0.87[AFR][1000 genomes]
rs73083453	0.87[AFR][1000 genomes]
rs73083460	0.87[AFR][1000 genomes]
rs73083463	1.00[AFR][1000 genomes]
rs73083467	0.87[AFR][1000 genomes]
rs73083482	1.00[AFR][1000 genomes]
rs73083485	1.00[AFR][1000 genomes]
rs73083493	0.89[AFR][1000 genomes]
rs73083496	0.89[AFR][1000 genomes]
rs73083498	0.89[AFR][1000 genomes]
rs73083500	0.89[AFR][1000 genomes]
rs73085420	0.87[AFR][1000 genomes]
rs73085444	0.87[AFR][1000 genomes]
rs73085451	0.87[AFR][1000 genomes]
rs73085460	0.87[AFR][1000 genomes]
rs73087422	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1796390	chr1:215561548-215799074	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1014266	chr1:215573051-215730838	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv430324	chr1:215649163-216082605	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	esv3411228	chr1:215704606-215742745	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv945291	chr1:215717059-215737649	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3334079	chr1:215717606-215745691	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv945634	chr1:215718075-215720233	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215715000-215719600	Enhancers	Colon Smooth Muscle	Colon
2	chr1:215718800-215720200	Weak transcription	Rectal Smooth Muscle	rectum

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