Variant report

Variant	rs73086879
Chromosome Location	chr12:39772185-39772186
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:39768164..39770883-chr12:39771123..39773923,3	K562	blood:
2	chr12:39772032..39774907-chr12:39777578..39779495,2	K562	blood:
3	chr12:39770581..39773028-chr12:39775151..39777027,2	K562	blood:
4	chr12:39771043..39772683-chr12:39784560..39786078,2	MCF-7	breast:
5	chr12:39735428..39738305-chr12:39770401..39772553,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1567738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73086886	1.00[AFR][1000 genomes]
rs73086887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73086888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73086895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73086896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73088803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73088804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73088806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73088808	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73088811	1.00[AMR][1000 genomes]
rs73088812	1.00[AMR][1000 genomes]
rs73094416	1.00[AMR][1000 genomes]
rs73094426	1.00[AMR][1000 genomes]
rs73094430	1.00[AMR][1000 genomes]
rs73094441	1.00[AMR][1000 genomes]
rs73094443	1.00[AMR][1000 genomes]
rs73094451	1.00[AMR][1000 genomes]
rs73094465	1.00[AMR][1000 genomes]
rs73094466	1.00[AMR][1000 genomes]
rs73094469	1.00[AMR][1000 genomes]
rs73094480	1.00[AMR][1000 genomes]
rs73094482	1.00[AMR][1000 genomes]
rs73094497	1.00[AMR][1000 genomes]
rs73094498	1.00[AMR][1000 genomes]
rs73094499	1.00[AMR][1000 genomes]
rs73094502	1.00[AMR][1000 genomes]
rs73096503	1.00[AMR][1000 genomes]
rs73096504	1.00[AMR][1000 genomes]
rs73096507	1.00[AMR][1000 genomes]
rs73096509	1.00[AMR][1000 genomes]
rs73096513	1.00[AMR][1000 genomes]
rs73096521	1.00[AMR][1000 genomes]
rs73096524	1.00[AMR][1000 genomes]
rs73096528	1.00[AMR][1000 genomes]
rs73096539	1.00[AMR][1000 genomes]
rs73096542	1.00[AMR][1000 genomes]
rs73096551	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832375	chr12:39599362-39784722	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv832376	chr12:39633080-39808277	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv531527	chr12:39680812-40182822	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:39727000-39779200	Weak transcription	Aorta	Aorta
2	chr12:39745000-39778600	Weak transcription	Pancreas	Pancrea
3	chr12:39757000-39784600	Weak transcription	Brain Germinal Matrix	brain
4	chr12:39761800-39806000	Weak transcription	Hela-S3	cervix
5	chr12:39763000-39781400	Weak transcription	A549	lung
6	chr12:39764000-39781000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr12:39765800-39772200	Weak transcription	Left Ventricle	heart
8	chr12:39767400-39784800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr12:39767600-39791400	Weak transcription	GM12878-XiMat	blood
10	chr12:39767800-39784800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr12:39768000-39776800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr12:39770000-39772200	Weak transcription	Fetal Heart	heart
13	chr12:39770400-39772600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr12:39771000-39772200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr12:39771200-39772600	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr12:39771400-39772600	Enhancers	Brain Hippocampus Middle	brain
17	chr12:39771800-39772200	Enhancers	Brain Anterior Caudate	brain
18	chr12:39771800-39772200	Enhancers	Fetal Kidney	kidney
19	chr12:39771800-39772400	Enhancers	Brain Substantia Nigra	brain
20	chr12:39771800-39772800	Enhancers	Brain Angular Gyrus	brain
21	chr12:39772000-39772400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr12:39772000-39772600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr12:39772000-39772600	Enhancers	Fetal Stomach	stomach

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